PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011088059.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family LBD
Protein Properties Length: 249aa    MW: 27356.1 Da    PI: 7.7064
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011088059.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26095.36.5e-3042142196
          DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                     +C++C++lr++C+++Cvl++ +     p++q++++ +v+k+FG++ ++++l+++p+++r+++++sl++eA+ r+ +Pv+Gavg++++++++l+q+
  XP_011088059.1  42 SCNGCRILRKGCNDNCVLRQSLqafesPQAQANATLFVAKFFGRAGLMSFLSSVPQSHRPALFQSLLFEACGRTVNPVNGAVGLLWTGNWNLCQS 136
                     6*********************99999999***************************************************************** PP

          DUF260  91 kaelal 96 
                     +++++l
  XP_011088059.1 137 AVDTVL 142
                     998765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089117.55941147IPR004883Lateral organ boundaries, LOB
PfamPF031952.0E-2542139IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MVASSSTPPL YIFLISLHSS PLPLNPLSQT EFLVHVPDRI MSCNGCRILR KGCNDNCVLR  60
QSLQAFESPQ AQANATLFVA KFFGRAGLMS FLSSVPQSHR PALFQSLLFE ACGRTVNPVN  120
GAVGLLWTGN WNLCQSAVDT VLRGGIPRSL PEFSGLAQSP ELDEYNNDDL YGSRDLKVGS  180
NDERRGLDLR LTAGFPARMT GRGRSKRRPA SPSEESETTT MESGFVCGQD LVEKEQVGCH  240
ETKLLRLFF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011088059.10.0PREDICTED: LOB domain-containing protein 37-like
SwissprotQ9FN112e-60LBD37_ARATH; LOB domain-containing protein 37
TrEMBLM1CF432e-87M1CF43_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000661655e-87(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9662490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49940.12e-61LOB domain-containing protein 38